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Summary
setup
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configure
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results
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display
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Enter the Query Sequence
Either
Paste sequences (max 10 sequences) in FASTA or plain text:
Or
Upload a file containing one or more FASTA sequences
Or
Enter a sequence ID or accession (EMBL, UniProt, RefSeq)
Or
Enter an existing ticket ID:
dna queries
peptide queries
Select the databases to search against
dna database
All cDNAs
Ensembl Non-coding RNA genes
Filtered Gene Set cDNAs
Genomic sequence
Genomic sequence (masked)
Working Gene Set cDNAs
Fgenesh cDNAs
peptide database
All Peptides
Filtered Gene Set Peptides
Working Gene Set Peptides
Fgenesh Peptides
Select the Search Tool
BLASTN
BLASTP
BLASTX
TBLASTN
TBLASTX
Search sensitivity:
Optimise search parameters to find the following alignments
Exact matches
Near-exact matches
Near-exact matches (oligo)
Near-exact matches (short)
Allow some local missmatch
Distant homologies
No optimisation
About BlastView
BlastView provides an integrated platform for sequence similarity searches against Ensembl databases, offering access to both BLAST and BLAT programs.
We would like to hear your impressions of BlastView, especially regarding functionality that you would like to see provided in the future. Many thanks for your time.
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