Clone Sequence Status

Sequenced maize clones are associated with sequencing status, encoded within the GenBank submission record as a reserved keyword. The following table describes the GenBank keywords, the number of clones with sequence available, and the number of annotated clones available on the maize browser.

Click on the numbers in the Sequenced column to access the relevant GenBank query results.

Keyword Description Sequenced Annotated
HTGS_FULLTOP 2 x 384 paired-end attempts (6X coverage); completed shotgun phase; initial assembly 530 688
HTGS_PREFIN Completed automated improvement phase (AutoFinish) 415 3,985
HTGS_ACTIVEFIN Active work being done by a finisher 6,853 4,439
HTGS_IMPROVED Finished sequence in gene regions; improved regions will be indicated; once order and orientation of improved segments are confirmed, a comment will be added to indicate this 8,451 6,409
* as of 06 June 2008
16,205 15,521

 
Release 1a.49 · June 2008
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