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    Sequence and assembly

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    • Contigs
      Track showing underlying assembly contigs
    • Sequence
      Track showing sequence in both directions. Only displayed at 1Kb and below.

    Genes and transcripts

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    • Non-coding genes annotated by CSHL (Genes)
      This track comprises multiple analyses; Gene annotations from the CSHL gene annotation pipeline developed under NAM project. It is performed through an automated, evidence-based method combining 3rd party software including Mikado, BRAKER and PASA. Further filtered by conservation and AED score, classified into coding and non-coding sets.; Gene annotations from the CSHL gene annotation pipeline developed under NAM project. It is performed through an automated, evidence-based method combining 3rd party software including Mikado, BRAKER and PASA. Further filtered by conservation and AED score, classified into coding and non-coding sets.
    • Genes
      Manually curated AGPv4 gene models with Apollo Annotation Editor
    • Gramene maize AGPv3 coding genes mapped with liftoff (AGPv3 mapped)
      This track comprises multiple analyses; Gramene maize AGPv3 coding genes mapped with liftoff; Gramene maize AGPv4 coding genes mapped with liftoff

    Variation

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      Variation sets

        Oligo probes

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          Repeat regions

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