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Non-coding genes annotated by CSHL (Genes)

This track comprises multiple analyses; Gene annotations from the CSHL gene annotation pipeline developed under NAM project. It is performed through an automated, evidence-based method combining 3rd party software including Mikado, BRAKER and PASA. Further filtered by conservation and AED score, classified into coding and non-coding sets.; Gene annotations from the CSHL gene annotation pipeline developed under NAM project. It is performed through an automated, evidence-based method combining 3rd party software including Mikado, BRAKER and PASA. Further filtered by conservation and AED score, classified into coding and non-coding sets.
Genes

Manually curated AGPv4 gene models with Apollo Annotation Editor
Gramene maize AGPv3 coding genes mapped with liftoff (AGPv3 mapped)

This track comprises multiple analyses; Gramene maize AGPv3 coding genes mapped with liftoff; Gramene maize AGPv4 coding genes mapped with liftoff

mRNA and protein alignments

HC_lncRNAs

High Confidence lncRNAs

Comparative genomics

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